References

Aaronson, J., Eckman, B., Blevins, R.A. et al. (1996)

Genome Research, 6: 829-45. Alexandersson, M., Cawley, S. and Pachter, L. (2003)

Genome Research, 13, 496-502. Antonarakis, S.E. and Mckusick, V.A. (2000) Nature

Genetics, 1, 11. Baekelandt, I.N., Goritchenko, L. and Benowitz, L.I.

(1997) Nucleic Acids Research, 25, 1281-8. Benfey, P.N. and Protopapas, A.D. (2005) Genomics,

Prentice-Hall, Upper Saddle River, NJ. Benson, D.A., Karsch-Mizrachi, I., Lipman, D.J. et al. (2006) Nucleic Acids Research, 34, D16-D20.

Boon, K., Osorio, E.C., Greenhut, S.F. et al. (2002) Proceedings of the National Academy Sciences, USA, 99, 11287-92.

Bork, P., Dandekar, T., Diaz-Lazoz, Y. et al. (1998) Journal of Molecular Biology, 283: 707-25.

Borodovsky, M.Y. and Mcininch, J.D. (1993) Computer Chemistry, 17: 123-33.

Bourne, P.E. and Weissig, H. (eds.) (2003) Structural Bioinformatics, John Wiley & Sons, Inc. New York.

Brent, M.R. and Guigo, R. (2004) Current Opinions in Structural Biology, 14, 264-72.

Burge, C. and Karlin, S. (1997) Journal of Molecular Biology, 268, 78-94;

Bourne, P.E. and Weissig, H. (eds.) (2003) Structural Bioinformatics, John Wiley & Sons, Inc., New York.

Burge, C. and Karlin, S. (1997) Journal of Molecular Biology, 268, 78-94

Canter, C.R. and Smith, C.L. (1999) Genomics, John Wiley & Sons, Inc., Hoboken, NJ.

Claverie, J.-M. (1997) Human Molecular Genetics, 6. 1735-44.

Cowell, I.G. and Austin, C.A. (eds) (1997) cDNA Library Protocols, Humana Press, Totowa, NJ.

Derisi, J., Penland, L., Brown, P.O. et al. (1996) "Use of cDNA microarray to analyze gene expression in human cancer." Nature Genetics, 14, 457-60.

Emmert, D.B., Stoehr, P.J., Stoesser, G. and Cameron, G.N. (1994) Nucleic Acids Research, 22, 3445-9.

Fickett, J.W. (1996) Trends in Genetics, 12, 316-20.

Fickett, J.W. and Hatzigeorgiou, A.G. (1997) Genome Research, 7, 861-78.

Fickett, J.W. and Tung, C.-S. (1992) Nucleic Acids Research, 20, 6441-50.

Fishel, R., Lescoe, M., Rao, M.R.S. et al. (1993) Cell, 75, 1027-38.

Fleischmann, R.D. et al. (1995) Science, 269, 496-512.

Fodor, S.P., Read, J.L., Pirrung, L. et al. (1991) Science, 251, 767-73.

Foissac, S., Bardou, P., Moisan, A. et al. (2003) Nucleic Acids Research, 31, 3742-5.

French, T., Gultyaev, A.P. and Gerdes, K. (1997) Journal of Molecular Biology, 273, 38-51.

Gelfand, M.S. (1995) Journal of Computer Biology, 2, 87-115.

Gelfand, M.S., Mironov, A.A. and Pevzner, P.A. (1996) Proceedings of the National Academy of Sciences, USA, 93, 9061-6.

Green, P., Lipman, D., Hillier, L. et al. (1993) Science, 229, 1711-6.

Guigo, R., Knudsen, S., Drake, N., and Smith, T. (1992) Journal of Molecular Biology, 226, 141-57.

Huang, X., Adams, M.D., Zhou, H. and Kerlevage, A. (1997) Genomics, 46, 37-45.

Jayasena, S.D. (1999) Clinical Chemistry, 45, 1628-50.

Johnson, J.M., Castle, J., Garnett-Engele, P. et al. (2003) Science, 302, 2141-4.

Kanz, C., Aldebert, P., Althorpe, N. et al. (2005) Nucleic Acids Research, 33, D29-33.

Klung, S.J. and Famulock, M. (1994) Molecular Biology Reports, 20, 97-107.

Korf, I., Flicek, P., Duan, D. and Brent, M.R. (2001) Bioinformatics, 17, S140-8;

Krogh, A. (1977) Proceedings of the International Conference on Intelligent Systems for Molecular Biology, 5, 179-86;

Lee, J.F., Hesselberth, J.R., Meyers, L.A. and Ellington, A.D. (2004) Nucleic Acids Research, 32, D95-D100.

Lee, Y., Tsai, J., Sunkara, S., Karamycheva, S. et al. (2005) Nucleic Acids Research, 33, D71-4.

Liolios, K., Tavernarakis, N., Hugenholtz, P. and Kyrpides, N.C. (2006) Nucleic Acid Resear, 34, D332-D334.

Lukashin, A.V. and Borodovsky, M. (1998) Nucleic Acids

Research, 26, 1107-15. McGinnis, S., Madden, T.L. (2004) Nucleic Acids

Research, 32, W20-5 McKusick, V.A. (1997) Genomics, 45, 244-9. Meyer, I.M. and Durbin, R. (2002) Bioinformatics, 18, 1309-18.

Miki, Y., Swensen, J., Shattuck-Eidens, D. et al. (1994)

Science, 266, 66-71. Mikilos, G.L.G. and Rubin, G.M. (1996) Cell, 86, 521-9. Müller, U.R. and Nicolau, D.V. (eds) (2005) Microarray Technology and its Applications, Springer, Berlin, Germany.

Research, 31, 502-4. Papadopoulos, N., Nicolaides, N.C., Wei, Y.-F. et al.

Parra, G., Agarwal, P., Abril, J.F. et al. (2003) Genome

Research, 13, 108-17 Perou, C.M., Jeffrey, S.S., van de Rijin, M. et al. (1999) 'Distinct gene expression patterns in human mammary epithelial cells and breast cancers.' Proceedings of the National Academy of Sciences, USA, 96, 9212-7. Pesole, G., Liumi, S., Grillo, G. et al. (2002) Nucleic

Acids Research, 30, 335-40. Pevsner, J. (2003) Bioinformatics and Functional

Genomics, Wiley-Liss, Inc. Hoboken, NJ. Pleasance, E.D., Marra, M.A. and Jones, S.J. (2003)

Genome Research, 13, 1203-15. Ponomarenko, J.V., Orlova, G.V., Ponomarenko, M.P.

et al. (2000) Nucleic Acids Research, 28, 205-8. Prashar, Y. and Weissmann, S.M. (1996) Proceedings of the National Academy of Sciences, USA. 93, 659-63. Praz, V., Perier, R., Bonnard, C. and Bucher, P. (2002)

Nucleic Acid Research, 3, 322-4. Reese, M.G., Eeckman, F.H., Kulp, D. and Haussler, D.J.

(1997) Journal of Computer Biology, 4, 311-23. Renner, C., Trumper, L., Pfitzenmeier, J.-P. et al. (1998)

BioTechniques, 24, 720-4. Richmond, C.S., Glasner, J.D., Mau, R. et al. (1999)

Nucleic Acids Research, 27, 3821-35. Risch, N. and Merikangas, K. (1996) Science, 273, 1516-7.

Roulet, E., Busso, S., Camargo, A.A. et al. (2002) Nature

Biotechnology, 20, 831-5. Saha, S., Sparks, A.B., Rago, C. et al. (2002) Nature

Biotechnology, 20, 508-12. Schena, M. (2003) Microarray Analysis, John Wiley &

Sons, Inc., New York. Senapathy, P., Shapiro, M.B. and Harris, N.L. (1990)

Methods in Enzymology, 18, 252-78. Senterre-Lesenfants, S., Alag, A.S. and Sobel, M.E.

(1995) Journal of Cell Biochemistry, 58, 445-54. Shapiro, L. and Harris, T. (2000) Current Opinions in

Biotechnology, 11, 31-5. Sherrington, R., Rogaev, E.I., Liang, Y. et al. (1995) Nature, 375, 754-60.

Shiue, L. (1997) Drug Developments Research, 41, 142-59. Singer, M. and Berg, P. (1991) Genes and Genomes: A Changing Perspective, University Science Books, Mill Valley, CA.

Smit, A.F.A. (1996) Cun. Opin. Gen. Dev., 6, 743-9. Solovyev, V.V., Salamov, A.A. and Lawrence, C.B.

(1994) Nucleic Acids Research, 22, 5156-63. Stanke, M., Steinkamp, R., Waack, S. and Morgenstern, B. (2004) Nucleic Acids Research, 32. W309-12.

Genomics Protocols, Humana Press, Totowa, NJ. Stekel, D. (2003) Microarray Bioinformatics, Cambridge

University, Press, Cambridge, UK. Strachan, T. and Read, A.P. (1999) Human Molecular

Genetics, BlOScience, Oxford, UK. Taher, L., Rinner, O., Garg, S. et al. (2004) Nucleic Acids

Research, 32, W305-8. Tamura, M., Hendrix, D.K., Klosterman, P.S. et al. (2004) Nucleic Acids Research, 32, D182-4.

Tateno, Y., Saitou, N., Okubo, K. et al. (2005) Nucleic Acids Research, 33, D25-8.

Uberbacher, E.C. and Mural, R.J. (1991) Proceedings of the National Academy of Sciences, USA, 88, 11261-5.

Vasmatzis, G., Essand, M., Brinkmann, U. et al. (1998) Proceedings of the National Academy of Sciences, USA, 95, 300-4.

Velculescu, V.E., Zhang, L., Zhou, W. et al. (1997) Cell, 88, 243-51.

Wahle, E. and Keller, W. (1996) Trends in Biochemical Science, 21, 247-50.

Wang, K., Gan, L., Jeffery, E. et al. (1999) Gene, 229, 101-8.

Weber, J.L. and Myers, E.W. (1997) Genome Research, 7, 401-9.

Wodiscka, L., Dong, H., Mittmann, M. et al. (1997) Nature Biotechnology, 15, 1359-67.

World Wide Webs cited

Aptamer database: http

Array expression database: http Bibliographies for computational gene recognition http

Cellular Response Database: http:

CODEHOP: http

Codon usage (CUTG): http

Codon usage database: http:

DbEST: http

Digital Differential Display: http:

DNA Data Bank of Japan (DDBJ): http

EMBL Nucleotide Sequence DB at EBI: http

Entrez: http

EID: http

EPD: http

ExInt database: http

GenBank (NCBI): http

GeneCards: http

Genetic Codes: http

Gene Server: http

GOLD: http

Human Developmental Anatomy: http:

Intron: http:

NDB: http

NEBcutter: http

PDA: http:

PDB: http

PlantProm: http:

RepeatMasker: http:

RNABase: http

SAGEmap: http

SAGEnet: http

SAGEGenie: http

SCOR: http

SEQANALREF at ExPASy: http

SELEX_DB: http

SRS retrieval system: http aptamer.icmb.utexas.edu/ www.ebi.ac.uk/arrayexpress/ /linkage.rockefeller.edu/wli/gene/right.html LH15.umbc.edu/crd

/bioinformatics.weizmann.ac.il/blocks/codehop.html www.kazusa.or.jp/codon/

/biochem.otago.ac.nz:800/Transterm/homepage.html www.ncbi.nlm.nih.gov/dbEST/index.html www.ncbi.nlm.nih.gov/UniGene/ddd.cgi?ORG=Hs ddbj.nig.ac.jp www.ebi.ac.uk/embl.html www.ncbi.nkm.nih.gov/Entrez mcb.harvard.edu/gilbert/EID/ www.epd.isb-sib.ch intron.bic.nus.edu.sg/exint/extint.html www.ncbi.nlm.nih.gov/GenBank /bioinformatics.weizmann.ac.il/cards/

www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi Globin globin.csc.psu.edu //www.genomesonline.org www.ana.ed.ac.uk/anatomy/database/ nutmeg.bio.indiana.edu/intron/index.html //ndbserver.rutgers.edu/ tools.neb.com/NEBcutter2/index.php dbb.nhri.org.tw/primer/ www.rcsb.org/pdb mendel.cs.rhul.ac.uk/

www.genome.washington.edu/analysistools/repeatmask.htm

www.rnabase.org/

www.ncbi.nlm.nih.gov/SAGE

www.sagenet.org

cgap.nci.nih.gov/SAGE

scor.lbl.gov/

expasy.hcuge.ch wwwmgs.bionet.nsc.ru/mgs/systems/selex/ srs.ebi.ac.uk/

TIGR Gene Indices of TDB:

Transterm:

UniGene:

UTRdb:

WIGS:

Webcutter:

XProfiler:

Useful genome databases: EST databases:

Alternative splicing databases: Single nucleotide polymorphisam databases: Various RNA sequence databases: Nucleic acid secondary databases: Computational genomic serves: Gene identification servers: Microarray databases and servers: Genome project databases: Human cancer databases:

http://www.tigr.org/tdb/tdb.html

http://uther.otago.ac.nz/Transterm.html

http://www/ncbi.nlm.nih.gov/UniGene/

http://bigrea.area.ba.cnr.it:8000/srs6/

http://www.genome.wi.mit.edu/

http://www.firstmarket.com/cutter/cut2.html

http://www.ncbi.nlm.nih.gov/ncicgap/cgapxpsetup.cgi

Table 15.2

Table 15.3

Table 15.4

Table 15.6

Table 15.7

Table 15.8

Table 15.9

Table 15.10

Table 15.12

Table 15.13

Table 15.14

Was this article helpful?

0 0
10 Ways To Fight Off Cancer

10 Ways To Fight Off Cancer

Learning About 10 Ways Fight Off Cancer Can Have Amazing Benefits For Your Life The Best Tips On How To Keep This Killer At Bay Discovering that you or a loved one has cancer can be utterly terrifying. All the same, once you comprehend the causes of cancer and learn how to reverse those causes, you or your loved one may have more than a fighting chance of beating out cancer.

Get My Free Ebook


Post a comment